Towards a Taxonomically Intelligent Phylogenetic Database

نویسنده

  • Roderic D. M. Page
چکیده

This note outlines some of the key intellectual obstacles that stand in the way of creating a usable phylogenetic database. These challenges include the need to accommodate multiple taxonomic names and classifications, and the need for tools to query trees in biologically meaningful ways. Until these problems are addressed, and a taxonomically intelligent phylogenetic database created, much of our phylogenetic knowledge will languish in the pages of journals.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Taxonomic review of Argentine mackerel Scomber japonicus (Houttuyn, 1782) by phylogenetic analysis

Taxonomically, Argentine mackerels were first considered as Scomber japonicus marplatensis and later as Scomber japonicus Houttuyn 1782, although, in the last years, different studies have suggested that South Atlantic mackerel species belongs to Scomber colias Gmelin 1789. These latter results, incorporated in the main fish databases (FishBase and Catalog of Fishes), promoted a phylogenetic st...

متن کامل

The internal transcribed spacer 2 database—a web server for (not only) low level phylogenetic analyses

The internal transcribed spacer 2 (ITS2) is a phylogenetic marker which has been of broad use in generic and infrageneric level classifications, as its sequence evolves comparably fast. Only recently, it became clear, that the ITS2 might be useful even for higher level systematic analyses. As the secondary structure is highly conserved within all eukaryotes it serves as a valuable template for ...

متن کامل

Taxonomically Clustering Organisms Based on the Profiles of Gene Sequences Using PCA

The biological implications of bioinformatics can already be seen in various implementations. Biological taxonomy may seem like a simple science in which the biologists merely observe similarities among organisms and construct classifications according to those similarities, but it is not so simple. By applying data mining techniques on gene sequence database we can cluster the data to find int...

متن کامل

Towards Information Brokering: an ‘intelligent’ Database Navigation and Management System

In a ‘real-world’ database application the need to make available data according to the user’s requirements is very real. For that matter, the true measure of the efficacy of a database system is its ability to provide ‘intelligent’ database navigation mechanisms that can handle complex user queries for extracting pertinent and useful data from a database. Here, we propose a database applicatio...

متن کامل

A reappraisal of the Pyriculariaceae in Iran

The family Magnaporthaceae considered as a single-family placed in the order Magnaporthales. Currently, three distinct clades are phylogenetically distinguished in this order that one is referred as the Pyriculariaceae. The Pyriculariaceae is characterized as a novel family having new genera, new species, new combinations and neotypification (basionym). To taxonomically evaluate this family, an...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2004